PUBLIC HEALTH - COVID
African regional assistance to South Sudan and Kenya during the
pandemic
31 MAR 2022
This post explores how regional responses to the Covid-19 pandemic by the African Union and
Africa CDC affected national responses in Kenya and South Sudan.
The African Union (AU) and its specialised health institute, the Africa Centres for Disease
Control and Prevention (Africa CDC), responded to the COVID-19 pandemic with several
regional initiatives. Their strategy, outlined in the Joint Continental Strategy, aimed to
support member states, coordinate efforts, and advocate for the region.
This project’s previous work focused on mapping the regional response to the pandemic, but
important questions remain about the impact of this regional support. In collaboration with
Amref International University Kenya and Amref South Sudan, we explored the impact of AU
and Africa CDC support on the national responses to the pandemic in Kenya and South
Sudan. This piece relies on an analysis of primary source documents from the AU and Africa
CDC as well as news articles and reports. In addition, the analysis is supported by a limited
number of key informant interviews of with government officials.
SOUTH SUDAN
COVID-19 in South Sudan
As of early March 2022, South Sudan had officially recorded just over 17,000 cases of COVID19. However, accurate reporting can be difficult, and beyond the case numbers, the COVID19 pandemic has had a significant impact on the economic and political landscape. The
pandemic and social distancing policies impacted economic growth, investment, and market
participation in South Sudan. The poverty rate was already very high due to ongoing conflict
and development challenges, but it rose in 2020. COVID-19 also hit South Sudan at a
particularly tenuous moment as the country was trying to end its civil war. The Revitalised
Agreement on the Resolution of the Conflict in the Republic of South Sudan (R-ARCSS) was
signed in September 2018. However, the transitional government was not inaugurated until
February 2020, and just a few weeks later government officials and ministers were dealing
1
with the impact of the pandemic and often needing to self-isolate themselves. As of early
2021, the government was significantly behind in implementing the peace agreement.
Regional Support to and Collaboration with South Sudan
As with AU assistance to the entire region, there has been multiple components
encompassing political advocacy and solidarity, economic support, and public health
expertise and resources. South Sudan also faced humanitarian disasters during the
pandemic, and the AU Commission specifically highlighted its plight and called for increased
member state support to South Sudan. This solidarity specific to South Sudan is part of a much
larger picture of the AU advocating for member states and raising issues of vaccine
inequality and more recently travel bans.
The AU has not only been engaged in advocating for more vaccine equity but in
securing additional vaccine doses for African states beyond those provided by COVAX. The
AU reported it secured an additional 270 million doses in early 2021. Of these, 39 million
were slated to be distributed through the East African Community (EAC) with 2.3 million
allocated to South Sudan.
Public health support through Africa CDC began very early on in the pandemic. For example,
in February 2020, Africa CDC held a training in Nigeria for representatives from 22 member
states, including South Sudan, to build capacity to prevent infection at healthcare facilities
and to screen air travellers. And it has continued throughout. In summer 2021, Africa CDC,
in collaboration with Project HOPE and the West African Health Organisation (WAHO), trained
140 healthcare workers on COVID-19 vaccines. Healthcare workers from Economic
Community of West African States (ECOWAS) member states and South Sudan attended.
There has also been in-kind support coming from African institutions and businesses,
international organisations, and charitable foundations, which Africa CDC helped to
coordinate and disseminate. In December 2020, Africa CDC delivered mechanical ventilators
and oxygen concentrators donated by the Wellcome Foundation to South Sudan. In April
2021, Africa CDC distributed 200,000 PCR extraction kits to 10 member states, including South
Sudan. It is unclear exactly how many went to South Sudan.
Impact of Regional Support
Africa CDC documents and media reporting show many specific initiatives of regional in-kind
and training support to South Sudan. More recently, Africa CDC and the AU have also been
instrumental in addressing vaccine inequality and augmenting COVAX with Africa-led
initiatives to procure more vaccines for the continent. The regional health body is also
investing in bolstering Africa’s ability to respond to the next pandemic by building capacity in
the healthcare professional workforce, investing in laboratory facilities and disease
surveillance, and establishing regional approval and manufacturing of vaccines.
However, Africa CDC has not been instrumental in shaping the South Sudan national COVID19 response. Africa CDC has put out a significant amount of policy and public health guidance
as well as real-time information on cases throughout Africa. In South Sudan, government
officials interviewed for this research, indicated that the Government of South Sudan used
2
this guidance to confirm or strengthen nation decisions, but it was not necessarily the guiding
force in crafting government policy. They also cited many other sources of information,
notably the World Health Organisation (WHO) and local authorities.
KENYA
COVID-19 in Kenya
As of January 2022, Kenya was experiencing its fifth wave of COVID-19, and as of early March
2022, Kenya has officially recorded just over 323,000 cases of COVID-19. As seen in South
Sudan and around the globe, the pandemic also had a profound impact on the Kenyan
economy, health systems, and vulnerable populations.
Regional Support to and Collaboration with Kenya
Kenya has supported Africa CDC and one of the key issues for Kenya’s delegates at the
Ordinary Sessions of the AU Assembly and Executive Council held in February 2022 was
support for the operationalisation of Africa CDC. Cabinet Secretary Ambassador Raychelle
Omamo stating through the Ministry of Foreign Affairs, “In order to be fully prepared to
respond (to another pandemic), we must ensure that Africa CDC is properly engineered to
live up to its task and fit for purpose”. Kenya strongly supported the Africa CDC Trusted
Travels Platform and was a pioneer country in its development and move to digitize vaccine
records, and Kenyan officials praised the continental efforts to respond to the COVID-19
pandemic. Like South Sudan, Kenya also received allocations of vaccines through the African
Vaccine Acquisition Trust. For example, in October 2021, Kenya received 252,000 doses of
the Johnson & Johnson vaccine.
Impact of Regional Support
It is clear from Government of Kenya statements and links between Kenya and Africa CDC that
there will be ongoing collaboration. One of the most notable spaces for collaboration will be
through the Eastern African Regional Collaboration Centre (RCC), which is hosted by Kenya
and headquartered in Nairobi. This RCC was launched on 1 October 2021 with an event
discussing effective responses to COVID-19 and future public health threats.
Further Research
This piece offers a window into the impact of regional support to member states. However,
it has limitations. It profiles two states whereas the AU has 55 member states all of which
have different needs and capacities and which saw uneven impacts from the pandemic. It is
also based on very limited interviews due to availability of government officials. However, it
provides a basis for further research to understand the utility of the trainings and supplies
that were offered and the benefits and lessons from coordination amongst national and
regional actors. Africa CDC has also set the stage for ongoing collaboration through RCCs and
for long-term capacity building within the region and national health ministries, which will
surely impact readiness to manage future public health challenges.
3
Disclosure: Amref Health Africa is a partner of Africa CDC and WHO and has aided in the
COVID-19 response in South Sudan and other countries. This research project partnered with
the Amref International University, based in Nairobi, Kenya, and Amref Health Africa in South
Sudan.
Acknowledgements: We want to acknowledge Rawiyah Aboud, Jackeline Njuguna, Winfrida
Mutegi, and Gilbert Sigei, postgraduate students at Amref International University, for their
support in the desk review.
About the authors
Kathryn Nash: University of Edinburgh Law School Old College
Samuel Okaro: Amref South Sudan, Opp UN-OCHA Juba
Ireri Mugambi Edward: Amref International University & Smart Health Equas Consultants
Limited Company
Lydia Atambo: Amref International University
Bibliography (sources also hyperlinked above)
Abraham A. Awolich. “COVID-19 and the Political Transition in South Sudan”. The Sudd
Institute (6 February 2021). Available
at: https://www.suddinstitute.org/publications/show/-ce7120
Elizabeth Merab. “EAC states to get 39m Covid vaccine doses from AU”. The East African (14
January 2021). Available at: https://www.theeastafrican.co.ke/tea/science-health/covidvaccine-doses-from-au-
James Alic Garang. “Will the Impact of the Pandemic on the Expected National Output
Persis?”. The Sudd Institute (3 June 2021). Available
at: https://www.suddinstitute.org/publications/show/60b9c59aa6872.
Africa CDC and African Union Documents
Africa CDC to launch Eastern Regional Co-Ordination centre. African Union (24 September
2021). Available at: https://au.int/en/pressreleases/-/africa-cdc-launch-easternregional-co-ordination-center
African Joint Continental Strategy (5 March 2020). Available
at: https://africacdc.org/download/africa-joint-continental-strategy-for-covid-19-outbreak/
Framework for Public Health Workforce Development,-. Africa CDC (10 March
2020). Available at: https://africacdc.org/download/framework-for-public-healthworkforce-development-/
Kenya’s Statement on the Africa CDC Trusted Travel Platform. Africa CDC (25 May 2021).
Available at: https://africacdc.org/news-item/kenyas-statement-on-the-africa-cdc-trustedtravels-platform/
4
Outbreak Brief #9. Africa CDC (17 March 2020). Available at: https://africacdc.org/wpcontent/uploads/2020/03/AfricaCDCBrief_NovelCoronavirus_9_17MAR20-EN.pdf
Outbreak Brief #47. Africa CDC (8 December 2020). Available at: https://africacdc.org/wpcontent/uploads/2020/12/AfricaCDC_COVIDBrief_8DEC20_EN-.pdf
Outbreak Brief #91. Africa CDC (14 October 2021). Available
at: https://africacdc.org/download/outbreak-brief-91-coronavirus-disease-2019-covid-19pandemic/
Outbreak Brief #98. Africa CDC (30 November 2021). Available
at: https://africacdc.org/download/outbreak-brief-98-coronavirus-disease-2019-covid-19pandemic/
Outbreak Brief #103. Africa CDC (4 January 2022). Available
at: https://africacdc.org/download/outbreak-brief-103-coronavirus-disease-2019-covid-19pandemic/
Partnership for African Vaccine Manufacturing: From Aspiration to Action. Africa CDC (7
December 2021). Available at: https://africacdc.org/event/partnership-for-african-vaccinemanufacturing-pavm-from-aspiration-to-action/
US $100 million Africa Pathogen Genomics Initiative to boost disease surveillance and
emergency response capacity in Africa. Africa CDC (12 October 2020). Available
at: https://africacdc.org/news-item/us100-million-africa-pathogen-genomics-initiative-toboost-disease-surveillance-and-emergency-response-capacity-in-africa/
Member State Documents
Kenya Support the Operationalization of Africa CDC. Republic of Kenya Ministry of Foreign
Affairs (4 February 2022). Available at: https://mfa.go.ke/kenya-suppot-theoperationalization-of-africa-cdc/
5